Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A1P12109 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.82■□□□□ 0.76
COL6A1P12109 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.82■□□□□ 0.76
COL6A1P12109 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.82■□□□□ 0.76
COL6A1P12109 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.82■□□□□ 0.76
COL6A1P12109 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A1P12109 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.82■□□□□ 0.76
COL6A1P12109 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
COL6A1P12109 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
COL6A1P12109 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL6A1P12109 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A1P12109 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.82■□□□□ 0.76
COL6A1P12109 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.81■□□□□ 0.76
COL6A1P12109 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 AL139400.1-201ENST00000366220 510 ntBASIC19.81■□□□□ 0.76
COL6A1P12109 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.81■□□□□ 0.76
COL6A1P12109 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 AC108073.2-201ENST00000464002 357 ntBASIC19.81■□□□□ 0.76
COL6A1P12109 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.81■□□□□ 0.76
COL6A1P12109 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.81■□□□□ 0.76
COL6A1P12109 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.81■□□□□ 0.76
COL6A1P12109 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.81■□□□□ 0.76
COL6A1P12109 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.81■□□□□ 0.76
COL6A1P12109 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL6A1P12109 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.81■□□□□ 0.76
COL6A1P12109 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.81■□□□□ 0.76
COL6A1P12109 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A1P12109 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
COL6A1P12109 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A1P12109 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A1P12109 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A1P12109 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A1P12109 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A1P12109 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.8■□□□□ 0.76
COL6A1P12109 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.8■□□□□ 0.76
COL6A1P12109 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.8■□□□□ 0.76
COL6A1P12109 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.8■□□□□ 0.76
COL6A1P12109 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A1P12109 PRSS29P-201ENST00000440800 595 ntBASIC19.8■□□□□ 0.76
COL6A1P12109 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A1P12109 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.8■□□□□ 0.76
COL6A1P12109 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A1P12109 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A1P12109 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A1P12109 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A1P12109 AL161938.1-201ENST00000569833 2180 ntBASIC19.8■□□□□ 0.76
COL6A1P12109 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A1P12109 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
COL6A1P12109 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A1P12109 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 AC006504.4-201ENST00000592118 1568 ntBASIC19.79■□□□□ 0.76
COL6A1P12109 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A1P12109 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A1P12109 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A1P12109 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A1P12109 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
COL6A1P12109 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
COL6A1P12109 ELK2BP-201ENST00000415014 1224 ntBASIC19.79■□□□□ 0.76
COL6A1P12109 TSEN15P1-201ENST00000423257 515 ntBASIC19.79■□□□□ 0.76
COL6A1P12109 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A1P12109 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.79■□□□□ 0.76
COL6A1P12109 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A1P12109 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.79■□□□□ 0.76
COL6A1P12109 AC122714.2-201ENST00000502787 707 ntBASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms