Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.9■□□□□ 0.78
TPM1P09493 KRT18P55-202ENST00000578578 1546 ntBASIC19.9■□□□□ 0.78
TPM1P09493 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC19.9■□□□□ 0.78
TPM1P09493 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TPM1P09493 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.9■□□□□ 0.78
TPM1P09493 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TPM1P09493 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TPM1P09493 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TPM1P09493 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
TPM1P09493 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TPM1P09493 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TPM1P09493 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TPM1P09493 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.89■□□□□ 0.77
TPM1P09493 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TPM1P09493 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.89■□□□□ 0.77
TPM1P09493 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TPM1P09493 MIR3180-5-201ENST00000583743 153 ntBASIC19.89■□□□□ 0.77
TPM1P09493 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TPM1P09493 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TPM1P09493 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 SDHAP2-201ENST00000455183 2001 ntBASIC19.88■□□□□ 0.77
TPM1P09493 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
TPM1P09493 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.88■□□□□ 0.77
TPM1P09493 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TPM1P09493 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.88■□□□□ 0.77
TPM1P09493 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 HLA-L-209ENST00000420110 1011 ntBASIC19.88■□□□□ 0.77
TPM1P09493 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 AC090192.1-201ENST00000517740 490 ntBASIC19.88■□□□□ 0.77
TPM1P09493 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.88■□□□□ 0.77
TPM1P09493 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TPM1P09493 AC073648.6-201ENST00000641589 218 ntBASIC19.88■□□□□ 0.77
TPM1P09493 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TPM1P09493 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
TPM1P09493 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.87■□□□□ 0.77
TPM1P09493 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.87■□□□□ 0.77
TPM1P09493 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
TPM1P09493 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.87■□□□□ 0.77
TPM1P09493 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.87■□□□□ 0.77
TPM1P09493 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.87■□□□□ 0.77
TPM1P09493 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TPM1P09493 C1QBPP2-201ENST00000528754 825 ntBASIC19.87■□□□□ 0.77
TPM1P09493 RARRES2P10-201ENST00000564312 460 ntBASIC19.87■□□□□ 0.77
TPM1P09493 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 AC093010.1-201ENST00000473625 1624 ntBASIC19.87■□□□□ 0.77
TPM1P09493 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
TPM1P09493 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TPM1P09493 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TPM1P09493 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.86■□□□□ 0.77
TPM1P09493 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TPM1P09493 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TPM1P09493 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.86■□□□□ 0.77
TPM1P09493 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
TPM1P09493 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.86■□□□□ 0.77
TPM1P09493 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms