Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.51■□□□□ 0.872e-7■■■■■ 127.2
SF3B1O75533 SLC12A2-206ENST00000509205 4263 ntTSL 1 (best)18.81■□□□□ 0.62e-7■■■■■ 127.2
SF3B1O75533 RHOC-218ENST00000528831 463 ntTSL 318.54■□□□□ 0.562e-7■■■■■ 127.2
SF3B1O75533 ASPSCR1-207ENST00000579684 564 ntTSL 318.35■□□□□ 0.532e-7■■■■■ 127.2
SF3B1O75533 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.382e-7■■■■■ 127.2
SF3B1O75533 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.282e-7■■■■■ 127.2
SF3B1O75533 AL603832.3-205ENST00000606954 680 ntTSL 216.53■□□□□ 0.242e-7■■■■■ 127.2
SF3B1O75533 RHOC-212ENST00000468093 1042 ntTSL 316.46■□□□□ 0.232e-7■■■■■ 127.2
SF3B1O75533 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.212e-7■■■■■ 127.2
SF3B1O75533 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.022e-7■■■■■ 127.2
SF3B1O75533 RHOC-205ENST00000369636 786 ntTSL 2 BASIC14.68□□□□□ -0.062e-7■■■■■ 127.2
SF3B1O75533 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.062e-7■■■■■ 127.2
SF3B1O75533 DNM2-221ENST00000593203 2507 ntTSL 214.67□□□□□ -0.062e-7■■■■■ 127.2
SF3B1O75533 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.072e-7■■■■■ 127.2
SF3B1O75533 RHOC-216ENST00000484280 891 ntTSL 514.56□□□□□ -0.082e-7■■■■■ 127.2
SF3B1O75533 AL603832.3-202ENST00000607158 807 ntTSL 513.42□□□□□ -0.262e-7■■■■■ 127.2
SF3B1O75533 AL603832.3-203ENST00000606505 813 ntAPPRIS P5 TSL 5 BASIC12.25□□□□□ -0.452e-7■■■■■ 127.2
SF3B1O75533 AL603832.3-204ENST00000605933 744 ntAPPRIS ALT2 TSL 512.25□□□□□ -0.452e-7■■■■■ 127.2
SF3B1O75533 AL603832.3-201ENST00000471038 792 ntTSL 212.02□□□□□ -0.492e-7■■■■■ 127.2
SF3B1O75533 RHOC-211ENST00000436685 517 ntTSL 510.85□□□□□ -0.672e-7■■■■■ 127.2
SF3B1O75533 HDAC10-221ENST00000498366 2153 ntTSL 519.69■□□□□ 0.746e-8■■■■■ 127.1
SF3B1O75533 HDAC10-214ENST00000483222 2091 ntTSL 519.33■□□□□ 0.696e-8■■■■■ 127.1
SF3B1O75533 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.56e-8■■■■■ 127.1
SF3B1O75533 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.99■□□□□ 0.476e-8■■■■■ 127.1
SF3B1O75533 HDAC10-203ENST00000415993 2375 ntTSL 1 (best)17.87■□□□□ 0.456e-8■■■■■ 127.1
SF3B1O75533 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.81■□□□□ 0.446e-8■■■■■ 127.1
SF3B1O75533 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.37■□□□□ 0.694e-6■■■■■ 127
SF3B1O75533 MIR202HG-202ENST00000553459 674 ntTSL 2 BASIC11.69□□□□□ -0.544e-6■■■■■ 127
SF3B1O75533 ZFYVE9-203ENST00000361625 2625 ntTSL 1 (best)5.09□□□□□ -1.596e-7■■■■■ 127
SF3B1O75533 SMG1-207ENST00000563235 2910 ntTSL 24.59□□□□□ -1.672e-6■■■■■ 127
SF3B1O75533 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.73□□□□□ -1.814e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-211ENST00000565835 905 ntTSL 319.44■□□□□ 0.74e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-210ENST00000564788 582 ntTSL 319.04■□□□□ 0.644e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.46■□□□□ 0.554e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-205ENST00000561852 768 ntTSL 317.38■□□□□ 0.374e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-206ENST00000563064 1048 ntTSL 316.55■□□□□ 0.244e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-209ENST00000564615 680 ntTSL 316.29■□□□□ 0.24e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.154e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-208ENST00000564191 853 ntTSL 315.5■□□□□ 0.074e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-212ENST00000566322 821 ntTSL 514.57□□□□□ -0.084e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC14.11□□□□□ -0.154e-6■■■■■ 127
SF3B1O75533 ATP6V0D1-202ENST00000426604 1257 ntTSL 212.29□□□□□ -0.444e-6■■■■■ 127
SF3B1O75533 ZGPAT-208ENST00000472711 787 ntTSL 321.86■■□□□ 1.093e-6■■■■■ 126.8
SF3B1O75533 TOM1-205ENST00000424387 2211 ntTSL 518.47■□□□□ 0.552e-7■■■■■ 126.8
SF3B1O75533 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.382e-7■■■■■ 126.8
SF3B1O75533 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.372e-7■■■■■ 126.8
SF3B1O75533 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.34■□□□□ 0.372e-7■■■■■ 126.8
SF3B1O75533 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.59■□□□□ 0.252e-7■■■■■ 126.8
SF3B1O75533 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.25■□□□□ 0.192e-7■■■■■ 126.8
SF3B1O75533 TOM1-203ENST00000404284 2622 ntTSL 216.09■□□□□ 0.172e-7■■■■■ 126.8
SF3B1O75533 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.472e-6■■■■■ 126.8
SF3B1O75533 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.112e-7■■■■■ 126.8
SF3B1O75533 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.172e-7■■■■■ 126.8
SF3B1O75533 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.212e-7■■■■■ 126.8
SF3B1O75533 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.232e-7■■■■■ 126.8
SF3B1O75533 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.532e-7■■■■■ 126.8
SF3B1O75533 TRIM65-202ENST00000540128 886 ntTSL 323.94■■□□□ 1.421e-6■■■■■ 126.6
SF3B1O75533 STAT6-218ENST00000555641 1804 ntTSL 517.98■□□□□ 0.471e-6■■■■■ 126.5
SF3B1O75533 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.3■□□□□ 0.21e-6■■■■■ 126.5
SF3B1O75533 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.231e-6■■■■■ 126.5
SF3B1O75533 STAT6-203ENST00000537215 2886 ntTSL 2 BASIC12.8□□□□□ -0.361e-6■■■■■ 126.5
SF3B1O75533 STAT6-204ENST00000538913 2879 ntTSL 2 BASIC12.67□□□□□ -0.381e-6■■■■■ 126.5
SF3B1O75533 STAT6-220ENST00000556155 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41e-6■■■■■ 126.5
SF3B1O75533 STAT6-212ENST00000554764 2777 ntTSL 212.3□□□□□ -0.441e-6■■■■■ 126.5
SF3B1O75533 STAT6-205ENST00000543873 3119 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.451e-6■■■■■ 126.5
SF3B1O75533 STAT6-201ENST00000300134 4034 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.911e-6■■■■■ 126.5
SF3B1O75533 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC14.31□□□□□ -0.123e-6■■■■■ 126.5
SF3B1O75533 ARHGAP21-203ENST00000396432 7167 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.463e-6■■■■■ 126.5
SF3B1O75533 BACH2-210ENST00000537989 9108 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.533e-6■■■■■ 126.4
SF3B1O75533 BACH2-202ENST00000343122 3981 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.773e-6■■■■■ 126.4
SF3B1O75533 BACH2-201ENST00000257749 9113 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.783e-6■■■■■ 126.4
SF3B1O75533 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.48■■■□□ 2.471e-6■■■■■ 126.4
SF3B1O75533 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30■■■□□ 2.392e-7■■■■■ 126.4
SF3B1O75533 C2orf69-202ENST00000491721 1034 ntTSL 225.12■■□□□ 1.614e-6■■■■■ 126.4
SF3B1O75533 ACYP2-205ENST00000458030 1330 ntTSL 324.48■■□□□ 1.516e-6■■■■■ 126.4
SF3B1O75533 IKZF1-214ENST00000484847 638 ntTSL 224.43■■□□□ 1.56e-6■■■■■ 126.4
SF3B1O75533 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.26■■□□□ 1.316e-6■■■■■ 126.4
SF3B1O75533 MUS81-206ENST00000525768 923 ntTSL 422.61■■□□□ 1.214e-9■■■■■ 126.4
SF3B1O75533 SGO2-203ENST00000418045 640 ntAPPRIS ALT2 TSL 521.99■■□□□ 1.114e-6■■■■■ 126.4
SF3B1O75533 PTDSS2-206ENST00000527325 723 ntTSL 321.78■■□□□ 1.084e-6■■■■■ 126.4
SF3B1O75533 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.011e-6■■■■■ 126.4
SF3B1O75533 XXYLT1-203ENST00000418940 582 ntTSL 421.15■□□□□ 0.983e-6■■■■■ 126.4
SF3B1O75533 DDX54-208ENST00000551344 872 ntTSL 520.77■□□□□ 0.911e-6■■■■■ 126.4
SF3B1O75533 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.914e-6■■■■■ 126.4
SF3B1O75533 REPS1-220ENST00000531675 353 ntTSL 520.6■□□□□ 0.893e-15■■■■■ 126.4
SF3B1O75533 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.71■□□□□ 0.753e-15■■■■■ 126.4
SF3B1O75533 REPS1-207ENST00000445570 2690 ntTSL 219.67■□□□□ 0.743e-15■■■■■ 126.4
SF3B1O75533 EIF5A2-202ENST00000460117 518 ntTSL 319.4■□□□□ 0.73e-15■■■■■ 126.4
SF3B1O75533 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.4■□□□□ 0.73e-15■■■■■ 126.4
SF3B1O75533 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.683e-6■■■■■ 126.4
SF3B1O75533 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.682e-6■■■■■ 126.4
SF3B1O75533 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.683e-6■■■■■ 126.4
SF3B1O75533 GPS1-206ENST00000578279 875 ntTSL 519.21■□□□□ 0.673e-15■■■■■ 126.4
SF3B1O75533 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.553e-15■■■■■ 126.4
SF3B1O75533 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.534e-6■■■■■ 126.4
SF3B1O75533 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.04■□□□□ 0.483e-6■■■■■ 126.4
SF3B1O75533 IDH3G-209ENST00000491235 589 ntTSL 317.68■□□□□ 0.423e-15■■■■■ 126.4
SF3B1O75533 REPS1-210ENST00000483468 6069 ntTSL 217.52■□□□□ 0.43e-15■■■■■ 126.4
SF3B1O75533 MRPS28-209ENST00000522987 487 ntTSL 317.03■□□□□ 0.322e-6■■■■■ 126.4
SF3B1O75533 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.273e-15■■■■■ 126.4
Retrieved 100 of 46,956 protein–RNA pairs in 1267.1 ms