Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC3O75056 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.6■□□□□ 0.41
SDC3O75056 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC3O75056 AC092865.5-201ENST00000545435 363 ntBASIC17.6■□□□□ 0.41
SDC3O75056 SART3-203ENST00000546611 1184 ntBASIC17.6■□□□□ 0.41
SDC3O75056 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC3O75056 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC3O75056 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC3O75056 AC021087.4-201ENST00000563761 564 ntBASIC17.6■□□□□ 0.41
SDC3O75056 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC3O75056 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC3O75056 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 AC139530.3-201ENST00000620344 690 ntBASIC17.6■□□□□ 0.41
SDC3O75056 AC116407.3-201ENST00000623905 1129 ntBASIC17.6■□□□□ 0.41
SDC3O75056 AC117500.6-201ENST00000624871 588 ntBASIC17.6■□□□□ 0.41
SDC3O75056 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SDC3O75056 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC3O75056 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 AP005117.1-201ENST00000584346 1413 ntBASIC17.59■□□□□ 0.41
SDC3O75056 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 RPS2P1-201ENST00000434010 821 ntBASIC17.59■□□□□ 0.41
SDC3O75056 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.59■□□□□ 0.41
SDC3O75056 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.59■□□□□ 0.41
SDC3O75056 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.59■□□□□ 0.41
SDC3O75056 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SDC3O75056 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SDC3O75056 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.59■□□□□ 0.41
SDC3O75056 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC3O75056 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC3O75056 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.58■□□□□ 0.41
SDC3O75056 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.58■□□□□ 0.41
SDC3O75056 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.58■□□□□ 0.41
SDC3O75056 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SDC3O75056 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDC3O75056 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.58■□□□□ 0.41
SDC3O75056 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SDC3O75056 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SDC3O75056 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDC3O75056 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDC3O75056 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SDC3O75056 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.58■□□□□ 0.41
SDC3O75056 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SDC3O75056 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.58■□□□□ 0.4
SDC3O75056 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.58■□□□□ 0.4
SDC3O75056 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SDC3O75056 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.58■□□□□ 0.4
SDC3O75056 ABCD1P5-201ENST00000445663 754 ntBASIC17.58■□□□□ 0.4
SDC3O75056 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 AC112698.1-201ENST00000510299 916 ntBASIC17.58■□□□□ 0.4
SDC3O75056 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.58■□□□□ 0.4
SDC3O75056 TERC-201ENST00000602385 541 ntBASIC17.58■□□□□ 0.4
SDC3O75056 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.58■□□□□ 0.4
SDC3O75056 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SDC3O75056 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.58■□□□□ 0.4
SDC3O75056 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.58■□□□□ 0.4
SDC3O75056 AC026471.1-201ENST00000564629 3026 ntBASIC17.58■□□□□ 0.4
SDC3O75056 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.58■□□□□ 0.4
SDC3O75056 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SDC3O75056 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.58■□□□□ 0.4
SDC3O75056 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms