Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.06■□□□□ 0.48
SHOX2O60902 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.06■□□□□ 0.48
SHOX2O60902 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SHOX2O60902 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.05■□□□□ 0.48
SHOX2O60902 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.05■□□□□ 0.48
SHOX2O60902 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.05■□□□□ 0.48
SHOX2O60902 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.05■□□□□ 0.48
SHOX2O60902 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.05■□□□□ 0.48
SHOX2O60902 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 AC116353.5-201ENST00000638148 1699 ntBASIC18.05■□□□□ 0.48
SHOX2O60902 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.05■□□□□ 0.48
SHOX2O60902 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHOX2O60902 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SHOX2O60902 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.04■□□□□ 0.48
SHOX2O60902 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.04■□□□□ 0.48
SHOX2O60902 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.04■□□□□ 0.48
SHOX2O60902 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.04■□□□□ 0.48
SHOX2O60902 AL512625.2-201ENST00000417533 625 ntBASIC18.04■□□□□ 0.48
SHOX2O60902 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.04■□□□□ 0.48
SHOX2O60902 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.04■□□□□ 0.48
SHOX2O60902 AC022517.1-201ENST00000592429 346 ntBASIC18.04■□□□□ 0.48
SHOX2O60902 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.04■□□□□ 0.48
SHOX2O60902 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.04■□□□□ 0.48
SHOX2O60902 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 KRT8P50-201ENST00000562022 1438 ntBASIC18.04■□□□□ 0.48
SHOX2O60902 AC100803.2-201ENST00000562459 1963 ntBASIC18.04■□□□□ 0.48
SHOX2O60902 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SHOX2O60902 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.04■□□□□ 0.48
SHOX2O60902 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.04■□□□□ 0.48
SHOX2O60902 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHOX2O60902 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
SHOX2O60902 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 AL109659.2-201ENST00000606809 1674 ntBASIC18.03■□□□□ 0.48
SHOX2O60902 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.03■□□□□ 0.48
SHOX2O60902 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.03■□□□□ 0.48
SHOX2O60902 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.03■□□□□ 0.48
SHOX2O60902 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHOX2O60902 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 AC023824.1-201ENST00000562945 2975 ntBASIC18.03■□□□□ 0.48
SHOX2O60902 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SHOX2O60902 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms