Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 TSPY14P-201ENST00000303979 915 ntBASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 AC010240.3-201ENST00000607688 395 ntBASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CPSF4LA6NMK7 CYP2D8P-201ENST00000433633 1490 ntBASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 TSPY15P-201ENST00000457163 923 ntBASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 EGLN1P1-201ENST00000531623 762 ntBASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 KRT8P9-201ENST00000558927 1449 ntBASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CPSF4LA6NMK7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 MIR3180-4-201ENST00000582223 153 ntBASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 AC024243.1-201ENST00000609234 778 ntBASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CPSF4LA6NMK7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.65■□□□□ 0.26
CPSF4LA6NMK7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms