Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 AC133041.1-202ENST00000642053 222 ntBASIC15.74■□□□□ 0.11
SHISA3A0PJX4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.74■□□□□ 0.11
SHISA3A0PJX4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 DUTP2-201ENST00000519164 463 ntBASIC15.73■□□□□ 0.11
SHISA3A0PJX4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AL353708.3-201ENST00000610272 989 ntBASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AC060834.1-201ENST00000443027 2032 ntBASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHISA3A0PJX4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 HLA-J-201ENST00000462773 1622 ntBASIC15.72■□□□□ 0.11
SHISA3A0PJX4 AL162727.3-201ENST00000635661 2787 ntBASIC15.72■□□□□ 0.11
SHISA3A0PJX4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 KSR1P1-201ENST00000446298 240 ntBASIC15.72■□□□□ 0.11
SHISA3A0PJX4 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 AC124016.1-201ENST00000609552 612 ntBASIC15.72■□□□□ 0.11
SHISA3A0PJX4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
SHISA3A0PJX4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms