Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 AC073508.3-201ENST00000619697 1419 ntBASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 HOMER2P1-201ENST00000455653 964 ntBASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 PAX6-247ENST00000638965 979 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS9D1Q9Y2B5 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 AC005521.1-201ENST00000393351 872 ntBASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 AC011558.1-201ENST00000623459 338 ntBASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 AL391807.1-203ENST00000604392 2365 ntBASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS9D1Q9Y2B5 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VPS9D1Q9Y2B5 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 RNF152P1-201ENST00000397754 604 ntBASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 AC211429.1-201ENST00000415277 523 ntBASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms