Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 LINC00304-203ENST00000565008 1864 ntBASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 PCDHA12-202ENST00000613593 2588 ntBASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 CYP2D8P-201ENST00000433633 1490 ntBASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 LINC00602-201ENST00000629776 2065 ntBASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 AC008687.5-201ENST00000593746 558 ntBASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMA1Q9UHB6 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 AP001094.4-201ENST00000579008 2176 ntBASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 KRT8P9-201ENST00000558927 1449 ntBASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 AC010947.1-201ENST00000623454 693 ntBASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMA1Q9UHB6 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.74
LIMA1Q9UHB6 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms