Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 AL590326.2-201ENST00000625139 305 ntBASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC4Q9NTJ3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 AC068880.1-201ENST00000507289 2297 ntBASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 AC005332.3-201ENST00000589904 676 ntBASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 GPR32P1-201ENST00000601788 811 ntBASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
SMC4Q9NTJ3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 Z83836.1-201ENST00000624605 1642 ntBASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 DUTP2-201ENST00000519164 463 ntBASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 AL390719.2-201ENST00000606993 987 ntBASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
SMC4Q9NTJ3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 AL353692.3-201ENST00000407031 1396 ntBASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 AC100803.2-201ENST00000562459 1963 ntBASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 AL136038.3-201ENST00000561909 1096 ntBASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 AC087388.1-201ENST00000571370 1112 ntBASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 HLA-DQB1-201ENST00000374943 1656 ntBASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC23.15■■□□□ 1.3
SMC4Q9NTJ3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms