Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 TSPY5P-201ENST00000426936 936 ntBASIC19.37■□□□□ 0.69
SIX2Q9NPC8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 KRT18P65-201ENST00000439811 1286 ntBASIC19.37■□□□□ 0.69
SIX2Q9NPC8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 AL645608.8-201ENST00000606034 2086 ntBASIC19.36■□□□□ 0.69
SIX2Q9NPC8 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 AC022898.2-201ENST00000616822 1312 ntBASIC19.36■□□□□ 0.69
SIX2Q9NPC8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 HBZP1-201ENST00000354915 429 ntBASIC19.36■□□□□ 0.69
SIX2Q9NPC8 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 AC104076.2-201ENST00000448912 469 ntBASIC19.36■□□□□ 0.69
SIX2Q9NPC8 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.36■□□□□ 0.69
SIX2Q9NPC8 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 MIR662-201ENST00000384847 95 ntBASIC19.35■□□□□ 0.69
SIX2Q9NPC8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 RNF152P1-201ENST00000397754 604 ntBASIC19.35■□□□□ 0.69
SIX2Q9NPC8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 AL359075.1-203ENST00000462729 1002 ntBASIC19.35■□□□□ 0.69
SIX2Q9NPC8 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 AC139713.2-201ENST00000641328 2723 ntBASIC19.35■□□□□ 0.69
SIX2Q9NPC8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SIX2Q9NPC8 AC009949.1-201ENST00000623048 1830 ntBASIC19.35■□□□□ 0.69
SIX2Q9NPC8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms