Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 RN7SL752P-201ENST00000463779 287 ntBASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 AC103810.3-201ENST00000583567 96 ntBASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 MIR6869-201ENST00000619434 62 ntBASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL25A1Q9BXS0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 SPDYE14P-201ENST00000442619 822 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 RNA5SP423-201ENST00000517127 109 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 RN7SL219P-201ENST00000582872 296 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 AC099522.2-201ENST00000607001 744 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 GGTLC5P-201ENST00000617623 998 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL25A1Q9BXS0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 AC022144.1-201ENST00000602255 1580 ntBASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 AC009102.3-201ENST00000623118 1491 ntBASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 API5-211ENST00000534695 560 ntTSL 5 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 AC104794.3-201ENST00000566840 1248 ntBASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 COX11-210ENST00000639671 696 ntBASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL25A1Q9BXS0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 AC020907.1-201ENST00000616460 1350 ntBASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 AP006294.1-201ENST00000415407 339 ntBASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 AL020989.1-201ENST00000422979 469 ntBASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 KRT223P-202ENST00000449164 1292 ntBASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 AC243562.1-201ENST00000560672 389 ntBASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms