Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MIR149-201ENST00000384879 89 ntBASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 AC106820.2-201ENST00000563775 3264 ntBASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 BX088651.1-201ENST00000540551 451 ntBASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 AC010947.1-201ENST00000623454 693 ntBASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 KRT17P2-201ENST00000300992 1314 ntBASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 FLJ13224-201ENST00000313737 1514 ntBASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM56Q9BRZ2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 CCR12P-201ENST00000446203 998 ntBASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM56Q9BRZ2 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 AL024508.2-201ENST00000607749 1894 ntBASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms