Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.68■□□□□ 0.1
COL12A1Q99715 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.68■□□□□ 0.1
COL12A1Q99715 AC148477.5-201ENST00000625164 1645 ntBASIC15.68■□□□□ 0.1
COL12A1Q99715 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.68■□□□□ 0.1
COL12A1Q99715 AC012676.1-201ENST00000574705 1949 ntBASIC15.68■□□□□ 0.1
COL12A1Q99715 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 AFG3L1P-217ENST00000557444 2447 ntBASIC15.68■□□□□ 0.1
COL12A1Q99715 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.68■□□□□ 0.1
COL12A1Q99715 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.68■□□□□ 0.1
COL12A1Q99715 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.68■□□□□ 0.1
COL12A1Q99715 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.68■□□□□ 0.1
COL12A1Q99715 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 MTMR9LP-203ENST00000426597 1545 ntBASIC15.68■□□□□ 0.1
COL12A1Q99715 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
COL12A1Q99715 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.67■□□□□ 0.1
COL12A1Q99715 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
COL12A1Q99715 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.67■□□□□ 0.1
COL12A1Q99715 AC027307.3-201ENST00000594262 1100 ntBASIC15.67■□□□□ 0.1
COL12A1Q99715 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.67■□□□□ 0.1
COL12A1Q99715 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 TCF3P1-201ENST00000423021 1937 ntBASIC15.67■□□□□ 0.1
COL12A1Q99715 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.67■□□□□ 0.1
COL12A1Q99715 ACTG1P14-201ENST00000446382 1122 ntBASIC15.67■□□□□ 0.1
COL12A1Q99715 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.67■□□□□ 0.1
COL12A1Q99715 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.67■□□□□ 0.1
COL12A1Q99715 AC004835.2-201ENST00000603762 682 ntBASIC15.67■□□□□ 0.1
COL12A1Q99715 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.67■□□□□ 0.1
COL12A1Q99715 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
COL12A1Q99715 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.67■□□□□ 0.1
COL12A1Q99715 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.67■□□□□ 0.1
COL12A1Q99715 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
COL12A1Q99715 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL12A1Q99715 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.66■□□□□ 0.1
COL12A1Q99715 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.66■□□□□ 0.1
COL12A1Q99715 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 AC006557.2-201ENST00000592985 1240 ntBASIC15.66■□□□□ 0.1
COL12A1Q99715 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
COL12A1Q99715 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC15.66■□□□□ 0.1
COL12A1Q99715 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
COL12A1Q99715 FAM58DP-201ENST00000428076 619 ntBASIC15.66■□□□□ 0.1
COL12A1Q99715 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.66■□□□□ 0.1
COL12A1Q99715 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.66■□□□□ 0.1
COL12A1Q99715 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC15.66■□□□□ 0.1
COL12A1Q99715 MIR943-201ENST00000401286 94 ntBASIC15.66■□□□□ 0.1
COL12A1Q99715 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
COL12A1Q99715 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL12A1Q99715 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.66■□□□□ 0.1
COL12A1Q99715 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.66■□□□□ 0.1
COL12A1Q99715 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL12A1Q99715 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL12A1Q99715 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.65■□□□□ 0.1
COL12A1Q99715 MIR1909-201ENST00000411312 80 ntBASIC15.65■□□□□ 0.1
COL12A1Q99715 ADH5P3-201ENST00000433842 1137 ntBASIC15.65■□□□□ 0.1
COL12A1Q99715 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms