Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL662799.1-202ENST00000614205 422 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.75■□□□□ 0.59
CDX2Q99626 AL390754.1-201ENST00000619088 582 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CDX2Q99626 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.75■□□□□ 0.59
CDX2Q99626 FO538757.1-201ENST00000623083 1397 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CDX2Q99626 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 FP475955.4-201ENST00000623131 1990 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CDX2Q99626 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.74■□□□□ 0.59
CDX2Q99626 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.74■□□□□ 0.59
CDX2Q99626 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.74■□□□□ 0.59
CDX2Q99626 ADH5P3-201ENST00000433842 1137 ntBASIC18.74■□□□□ 0.59
CDX2Q99626 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.74■□□□□ 0.59
CDX2Q99626 AC069335.1-201ENST00000489972 472 ntBASIC18.74■□□□□ 0.59
CDX2Q99626 AL512356.2-201ENST00000546955 174 ntBASIC18.74■□□□□ 0.59
CDX2Q99626 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.74■□□□□ 0.59
CDX2Q99626 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.74■□□□□ 0.59
CDX2Q99626 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.74■□□□□ 0.59
CDX2Q99626 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CDX2Q99626 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX2Q99626 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.74■□□□□ 0.59
CDX2Q99626 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.74■□□□□ 0.59
CDX2Q99626 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.74■□□□□ 0.59
CDX2Q99626 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.73■□□□□ 0.59
CDX2Q99626 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CDX2Q99626 AC006116.8-202ENST00000587620 1550 ntBASIC18.73■□□□□ 0.59
CDX2Q99626 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CDX2Q99626 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.73■□□□□ 0.59
CDX2Q99626 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CDX2Q99626 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.73■□□□□ 0.59
CDX2Q99626 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.73■□□□□ 0.59
CDX2Q99626 AL512638.1-201ENST00000457493 794 ntBASIC18.73■□□□□ 0.59
CDX2Q99626 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.73■□□□□ 0.59
CDX2Q99626 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 AC092919.2-201ENST00000623631 1645 ntBASIC18.73■□□□□ 0.59
CDX2Q99626 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CDX2Q99626 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX2Q99626 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.73■□□□□ 0.59
CDX2Q99626 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
CDX2Q99626 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.72■□□□□ 0.59
CDX2Q99626 AC099778.1-201ENST00000568593 1911 ntBASIC18.72■□□□□ 0.59
CDX2Q99626 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.72■□□□□ 0.59
CDX2Q99626 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 TREML5P-201ENST00000421694 576 ntBASIC18.72■□□□□ 0.59
CDX2Q99626 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.72■□□□□ 0.59
CDX2Q99626 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.72■□□□□ 0.59
CDX2Q99626 IGHV3-42-201ENST00000520410 361 ntBASIC18.72■□□□□ 0.59
CDX2Q99626 AC112191.1-201ENST00000523689 701 ntBASIC18.72■□□□□ 0.59
CDX2Q99626 SPDYE22P-201ENST00000582158 798 ntBASIC18.72■□□□□ 0.59
CDX2Q99626 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CDX2Q99626 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.72■□□□□ 0.59
CDX2Q99626 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.72■□□□□ 0.59
CDX2Q99626 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.72■□□□□ 0.59
CDX2Q99626 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.72■□□□□ 0.59
CDX2Q99626 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDX2Q99626 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CDX2Q99626 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.71■□□□□ 0.59
CDX2Q99626 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.71■□□□□ 0.59
CDX2Q99626 AC125807.1-201ENST00000483097 614 ntBASIC18.71■□□□□ 0.59
CDX2Q99626 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 IGHV3-71-201ENST00000523324 359 ntBASIC18.71■□□□□ 0.59
CDX2Q99626 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.71■□□□□ 0.59
CDX2Q99626 AC026120.1-201ENST00000611536 926 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms