Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AC236430.1-201ENST00000402231 743 ntBASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AP005018.1-201ENST00000525475 301 ntBASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AC018845.2-201ENST00000568326 409 ntBASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 LINC00628-201ENST00000628516 1289 ntBASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CSMD1Q96PZ7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 Z82202.1-201ENST00000623446 1880 ntBASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 AC073592.4-201ENST00000623827 446 ntBASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.3■□□□□ 0.04
CSMD1Q96PZ7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 AC006504.4-201ENST00000592118 1568 ntBASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD1Q96PZ7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 TEX21P-204ENST00000641479 1693 ntBASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.28■□□□□ 0.04
CSMD1Q96PZ7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms