Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL445228.2-201ENST00000605589 952 ntBASIC17.33■□□□□ 0.36
VMP1Q96GC9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 NFIC-211ENST00000641145 8399 ntBASIC17.33■□□□□ 0.36
VMP1Q96GC9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 AC124067.4-201ENST00000519691 2379 ntBASIC17.32■□□□□ 0.36
VMP1Q96GC9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.32■□□□□ 0.36
VMP1Q96GC9 KRT18P23-201ENST00000435622 1283 ntBASIC17.32■□□□□ 0.36
VMP1Q96GC9 AC034232.1-201ENST00000506026 1064 ntBASIC17.32■□□□□ 0.36
VMP1Q96GC9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 AC024243.1-201ENST00000609234 778 ntBASIC17.32■□□□□ 0.36
VMP1Q96GC9 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VMP1Q96GC9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.32■□□□□ 0.36
VMP1Q96GC9 AC008764.6-201ENST00000595909 2069 ntBASIC17.32■□□□□ 0.36
VMP1Q96GC9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.31■□□□□ 0.36
VMP1Q96GC9 AL359075.1-203ENST00000462729 1002 ntBASIC17.31■□□□□ 0.36
VMP1Q96GC9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VMP1Q96GC9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VMP1Q96GC9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms