Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 AC007967.3-201ENST00000434308 558 ntBASIC18.32■□□□□ 0.52
CHFRQ96EP1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 BX842568.4-201ENST00000421222 227 ntBASIC18.31■□□□□ 0.52
CHFRQ96EP1 AC092910.1-201ENST00000482027 1129 ntBASIC18.31■□□□□ 0.52
CHFRQ96EP1 OR7E14P-202ENST00000530490 1290 ntBASIC18.31■□□□□ 0.52
CHFRQ96EP1 AL139288.1-201ENST00000623748 933 ntBASIC18.31■□□□□ 0.52
CHFRQ96EP1 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
CHFRQ96EP1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHFRQ96EP1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHFRQ96EP1 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHFRQ96EP1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHFRQ96EP1 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHFRQ96EP1 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 AC140113.2-201ENST00000604370 208 ntBASIC18.3■□□□□ 0.52
CHFRQ96EP1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHFRQ96EP1 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 HLA-J-201ENST00000462773 1622 ntBASIC18.3■□□□□ 0.52
CHFRQ96EP1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHFRQ96EP1 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CHFRQ96EP1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 MIR1233-2-201ENST00000408138 82 ntBASIC18.29■□□□□ 0.52
CHFRQ96EP1 MIR1233-1-201ENST00000408722 82 ntBASIC18.29■□□□□ 0.52
CHFRQ96EP1 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 MTDHP4-201ENST00000600287 670 ntBASIC18.29■□□□□ 0.52
CHFRQ96EP1 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 AC008735.5-201ENST00000623544 497 ntBASIC18.29■□□□□ 0.52
CHFRQ96EP1 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms