Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP4CQ96CF2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP4CQ96CF2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CHMP4CQ96CF2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CHMP4CQ96CF2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
CHMP4CQ96CF2 NOC2LP2-201ENST00000407594 1944 ntBASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 FLJ13224-201ENST00000313737 1514 ntBASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CHMP4CQ96CF2 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP4CQ96CF2 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 AC016734.2-201ENST00000624325 1377 ntBASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 AC008687.5-201ENST00000593746 558 ntBASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 AC138028.4-201ENST00000564984 1845 ntBASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP4CQ96CF2 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms