Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 AC092338.2-201ENST00000568827 1415 ntBASIC16.23■□□□□ 0.19
PTP4A1Q93096 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.23■□□□□ 0.19
PTP4A1Q93096 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 TSPY15P-201ENST00000457163 923 ntBASIC16.23■□□□□ 0.19
PTP4A1Q93096 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 MIR3180-4-201ENST00000582223 153 ntBASIC16.23■□□□□ 0.19
PTP4A1Q93096 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTP4A1Q93096 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTP4A1Q93096 AL391005.1-201ENST00000623953 2435 ntBASIC16.23■□□□□ 0.19
PTP4A1Q93096 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AC090340.1-201ENST00000620778 4980 ntBASIC16.22■□□□□ 0.19
PTP4A1Q93096 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AL390955.1-201ENST00000428694 934 ntBASIC16.22■□□□□ 0.19
PTP4A1Q93096 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 CCR12P-201ENST00000446203 998 ntBASIC16.22■□□□□ 0.19
PTP4A1Q93096 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 DUTP2-201ENST00000519164 463 ntBASIC16.22■□□□□ 0.19
PTP4A1Q93096 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AC112497.1-201ENST00000624824 639 ntBASIC16.22■□□□□ 0.19
PTP4A1Q93096 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
PTP4A1Q93096 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTP4A1Q93096 AL355312.1-201ENST00000407115 2176 ntBASIC16.21■□□□□ 0.19
PTP4A1Q93096 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PTP4A1Q93096 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.21■□□□□ 0.19
PTP4A1Q93096 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTP4A1Q93096 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.21■□□□□ 0.19
PTP4A1Q93096 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.21■□□□□ 0.19
PTP4A1Q93096 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
PTP4A1Q93096 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.21■□□□□ 0.19
PTP4A1Q93096 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.21■□□□□ 0.19
PTP4A1Q93096 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms