Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB4Q8WW32 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB4Q8WW32 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 HCG11-201ENST00000411553 5696 ntBASIC18.05■□□□□ 0.48
HMGB4Q8WW32 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 IGHV3-22-201ENST00000520721 359 ntBASIC18.05■□□□□ 0.48
HMGB4Q8WW32 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGB4Q8WW32 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AC098831.1-202ENST00000438821 336 ntBASIC18.04■□□□□ 0.48
HMGB4Q8WW32 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AC012640.2-201ENST00000561606 901 ntBASIC18.04■□□□□ 0.48
HMGB4Q8WW32 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AC027601.4-201ENST00000611259 610 ntBASIC18.04■□□□□ 0.48
HMGB4Q8WW32 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AL139288.1-201ENST00000623748 933 ntBASIC18.04■□□□□ 0.48
HMGB4Q8WW32 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms