Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 KRT18P67-201ENST00000432816 1264 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 GAS2L1P1-201ENST00000420145 1480 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 PPIE-208ENST00000470213 927 ntTSL 3 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SYNE1Q8NF91 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AL109659.2-201ENST00000606809 1674 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC079781.3-201ENST00000449110 356 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 KRT18P23-201ENST00000435622 1283 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 MOK-208ENST00000519058 917 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CIB2-208ENST00000560618 804 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TEX30-205ENST00000376029 959 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 RCC2P3-201ENST00000418112 1537 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC243591.1-201ENST00000452967 1364 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC034236.2-201ENST00000606662 1610 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms