Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 AC074386.1-202ENST00000463561 864 ntBASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 AC008667.4-201ENST00000607370 168 ntBASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC1BQ8NDV3 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
SMC1BQ8NDV3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMC1BQ8NDV3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 MIR149-201ENST00000384879 89 ntBASIC21.32■■□□□ 1
SMC1BQ8NDV3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 IGLL3P-201ENST00000412472 434 ntBASIC21.32■■□□□ 1
SMC1BQ8NDV3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC1BQ8NDV3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.32■■□□□ 1
SMC1BQ8NDV3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 AC006504.4-201ENST00000592118 1568 ntBASIC21.31■■□□□ 1
SMC1BQ8NDV3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.31■■□□□ 1
SMC1BQ8NDV3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 CR383656.12-201ENST00000549567 513 ntBASIC21.31■■□□□ 1
SMC1BQ8NDV3 AC096734.2-201ENST00000562054 433 ntBASIC21.31■■□□□ 1
SMC1BQ8NDV3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC1BQ8NDV3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.31■■□□□ 1
SMC1BQ8NDV3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SMC1BQ8NDV3 SIGLEC16-201ENST00000599858 1437 ntBASIC21.3■■□□□ 1
SMC1BQ8NDV3 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms