Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 NUDT16P1-203ENST00000513809 620 ntBASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 AL355075.4-201ENST00000554988 638 ntBASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 AL445675.2-201ENST00000620291 557 ntBASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 AC112777.1-201ENST00000540175 1423 ntBASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PPP4R4Q6NUP7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.34■□□□□ 0.37
PPP4R4Q6NUP7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 AC008556.1-201ENST00000610908 2040 ntBASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.33■□□□□ 0.37
PPP4R4Q6NUP7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 REXO1L10P-201ENST00000615707 1290 ntBASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 REXO1L12P-201ENST00000622156 912 ntBASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 AC068587.9-201ENST00000641814 219 ntBASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 OR6D1P-203ENST00000641209 4860 ntBASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.33■□□□□ 0.36
PPP4R4Q6NUP7 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms