Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC079776.2-201ENST00000641154 1609 ntBASIC20.77■□□□□ 0.92
HMGCS2P54868 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGCS2P54868 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
HMGCS2P54868 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGCS2P54868 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGCS2P54868 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.77■□□□□ 0.91
HMGCS2P54868 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.77■□□□□ 0.91
HMGCS2P54868 AC126763.1-201ENST00000552015 2118 ntBASIC20.77■□□□□ 0.91
HMGCS2P54868 AC004817.3-201ENST00000602957 2129 ntBASIC20.77■□□□□ 0.91
HMGCS2P54868 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
HMGCS2P54868 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HMGCS2P54868 AC010460.3-201ENST00000511359 1579 ntBASIC20.76■□□□□ 0.91
HMGCS2P54868 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
HMGCS2P54868 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGCS2P54868 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HMGCS2P54868 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGCS2P54868 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGCS2P54868 UPF3AP3-201ENST00000420996 769 ntBASIC20.76■□□□□ 0.91
HMGCS2P54868 AC007967.2-201ENST00000432613 625 ntBASIC20.76■□□□□ 0.91
HMGCS2P54868 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGCS2P54868 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGCS2P54868 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGCS2P54868 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
HMGCS2P54868 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 PMPCAP1-201ENST00000508114 1576 ntBASIC20.76■□□□□ 0.91
HMGCS2P54868 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGCS2P54868 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
HMGCS2P54868 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.75■□□□□ 0.91
HMGCS2P54868 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGCS2P54868 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.75■□□□□ 0.91
HMGCS2P54868 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.75■□□□□ 0.91
HMGCS2P54868 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HMGCS2P54868 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGCS2P54868 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGCS2P54868 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGCS2P54868 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCS2P54868 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGCS2P54868 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 RPSAP43-201ENST00000402237 625 ntBASIC20.74■□□□□ 0.91
HMGCS2P54868 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 GPX1P2-201ENST00000429271 606 ntBASIC20.74■□□□□ 0.91
HMGCS2P54868 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCS2P54868 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCS2P54868 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.74■□□□□ 0.91
HMGCS2P54868 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 AL139424.1-201ENST00000607572 797 ntBASIC20.74■□□□□ 0.91
HMGCS2P54868 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.74■□□□□ 0.91
HMGCS2P54868 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.74■□□□□ 0.91
HMGCS2P54868 AL022326.1-202ENST00000641533 845 ntBASIC20.74■□□□□ 0.91
HMGCS2P54868 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
HMGCS2P54868 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HMGCS2P54868 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCS2P54868 AC120498.9-201ENST00000339021 3867 ntBASIC20.74■□□□□ 0.91
HMGCS2P54868 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HMGCS2P54868 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGCS2P54868 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms