Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
COL5A1P20908 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL5A1P20908 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A1P20908 PRYP5-201ENST00000451909 266 ntBASIC17.24■□□□□ 0.35
COL5A1P20908 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A1P20908 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A1P20908 YBX1P5-201ENST00000509441 847 ntBASIC17.24■□□□□ 0.35
COL5A1P20908 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 AC079781.4-201ENST00000641908 219 ntBASIC17.24■□□□□ 0.35
COL5A1P20908 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.23■□□□□ 0.35
COL5A1P20908 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.23■□□□□ 0.35
COL5A1P20908 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
COL5A1P20908 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 AC254562.1-201ENST00000417586 456 ntBASIC17.23■□□□□ 0.35
COL5A1P20908 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 METTL21AP1-201ENST00000438852 635 ntBASIC17.23■□□□□ 0.35
COL5A1P20908 BX005266.1-201ENST00000473402 457 ntBASIC17.23■□□□□ 0.35
COL5A1P20908 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A1P20908 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.23■□□□□ 0.35
COL5A1P20908 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.23■□□□□ 0.35
COL5A1P20908 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.23■□□□□ 0.35
COL5A1P20908 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A1P20908 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A1P20908 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL5A1P20908 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL5A1P20908 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 KLF4P1-201ENST00000412782 1185 ntBASIC17.22■□□□□ 0.35
COL5A1P20908 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A1P20908 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 NCF1C-201ENST00000438382 1427 ntBASIC17.22■□□□□ 0.35
COL5A1P20908 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.22■□□□□ 0.35
COL5A1P20908 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
COL5A1P20908 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A1P20908 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL5A1P20908 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL5A1P20908 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A1P20908 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 AC132938.6-201ENST00000623828 1655 ntBASIC17.21■□□□□ 0.35
COL5A1P20908 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 AP000974.1-201ENST00000623909 2387 ntBASIC17.21■□□□□ 0.35
COL5A1P20908 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL5A1P20908 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL5A1P20908 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A1P20908 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL5A1P20908 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL5A1P20908 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A1P20908 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL5A1P20908 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL5A1P20908 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.2■□□□□ 0.34
COL5A1P20908 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms