Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 AL391807.1-203ENST00000604392 2365 ntBASIC18.03■□□□□ 0.48
XRCC1P18887 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
XRCC1P18887 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
XRCC1P18887 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
XRCC1P18887 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.02■□□□□ 0.48
XRCC1P18887 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
XRCC1P18887 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
XRCC1P18887 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
XRCC1P18887 AP000593.1-201ENST00000393668 712 ntBASIC18.02■□□□□ 0.48
XRCC1P18887 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
XRCC1P18887 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.02■□□□□ 0.48
XRCC1P18887 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC1P18887 AL136038.4-201ENST00000603606 1261 ntBASIC18.02■□□□□ 0.48
XRCC1P18887 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.02■□□□□ 0.48
XRCC1P18887 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC1P18887 AC138932.1-201ENST00000534164 6830 ntBASIC18.02■□□□□ 0.47
XRCC1P18887 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC1P18887 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC1P18887 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.02■□□□□ 0.47
XRCC1P18887 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC1P18887 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.02■□□□□ 0.47
XRCC1P18887 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
XRCC1P18887 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC1P18887 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 AC106820.2-201ENST00000563775 3264 ntBASIC18.01■□□□□ 0.47
XRCC1P18887 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 AC134043.2-201ENST00000624206 2238 ntBASIC18.01■□□□□ 0.47
XRCC1P18887 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.01■□□□□ 0.47
XRCC1P18887 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.01■□□□□ 0.47
XRCC1P18887 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 PVRIG2P-201ENST00000435460 978 ntBASIC18.01■□□□□ 0.47
XRCC1P18887 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.01■□□□□ 0.47
XRCC1P18887 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.01■□□□□ 0.47
XRCC1P18887 AC009065.1-201ENST00000564055 1225 ntBASIC18.01■□□□□ 0.47
XRCC1P18887 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
XRCC1P18887 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 AC090340.1-201ENST00000620778 4980 ntBASIC18.01■□□□□ 0.47
XRCC1P18887 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.01■□□□□ 0.47
XRCC1P18887 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
XRCC1P18887 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
XRCC1P18887 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC1P18887 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms