Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL590627.1-203ENST00000421194 1026 ntBASIC18.68■□□□□ 0.58
HMGA1P17096 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGA1P17096 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGA1P17096 SART3-203ENST00000546611 1184 ntBASIC18.68■□□□□ 0.58
HMGA1P17096 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGA1P17096 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGA1P17096 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 AP000867.4-201ENST00000641616 219 ntBASIC18.68■□□□□ 0.58
HMGA1P17096 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 AL138781.2-201ENST00000617896 1843 ntBASIC18.67■□□□□ 0.58
HMGA1P17096 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HMGA1P17096 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGA1P17096 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGA1P17096 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGA1P17096 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGA1P17096 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGA1P17096 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 SCARNA2-201ENST00000458748 420 ntBASIC18.67■□□□□ 0.58
HMGA1P17096 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.67■□□□□ 0.58
HMGA1P17096 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HMGA1P17096 AL049840.3-201ENST00000602669 611 ntBASIC18.67■□□□□ 0.58
HMGA1P17096 AC120114.3-201ENST00000611923 658 ntBASIC18.67■□□□□ 0.58
HMGA1P17096 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGA1P17096 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGA1P17096 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGA1P17096 AC135776.1-201ENST00000319817 2481 ntBASIC18.67■□□□□ 0.58
HMGA1P17096 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGA1P17096 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 IL9RP2-201ENST00000423948 1312 ntBASIC18.67■□□□□ 0.58
HMGA1P17096 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGA1P17096 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGA1P17096 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HMGA1P17096 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGA1P17096 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
HMGA1P17096 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
HMGA1P17096 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HMGA1P17096 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGA1P17096 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGA1P17096 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGA1P17096 AC073648.2-201ENST00000510116 352 ntBASIC18.66■□□□□ 0.58
HMGA1P17096 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGA1P17096 AC021087.4-201ENST00000563761 564 ntBASIC18.66■□□□□ 0.58
HMGA1P17096 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGA1P17096 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGA1P17096 MIR7706-201ENST00000613747 67 ntBASIC18.66■□□□□ 0.58
HMGA1P17096 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGA1P17096 FAM215A-202ENST00000632077 792 ntBASIC18.66■□□□□ 0.58
HMGA1P17096 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 AC022898.2-201ENST00000616822 1312 ntBASIC18.66■□□□□ 0.58
HMGA1P17096 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HMGA1P17096 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 AC243591.1-201ENST00000452967 1364 ntBASIC18.66■□□□□ 0.58
HMGA1P17096 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGA1P17096 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGA1P17096 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HMGA1P17096 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGA1P17096 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HMGA1P17096 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HMGA1P17096 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGA1P17096 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGA1P17096 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms