Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.04■□□□□ 0.64
RB1P06400 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
RB1P06400 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.04■□□□□ 0.64
RB1P06400 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.04■□□□□ 0.64
RB1P06400 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.04■□□□□ 0.64
RB1P06400 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.04■□□□□ 0.64
RB1P06400 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.04■□□□□ 0.64
RB1P06400 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.04■□□□□ 0.64
RB1P06400 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.04■□□□□ 0.64
RB1P06400 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.04■□□□□ 0.64
RB1P06400 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.04■□□□□ 0.64
RB1P06400 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.04■□□□□ 0.64
RB1P06400 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RB1P06400 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.04■□□□□ 0.64
RB1P06400 AC002310.6-201ENST00000624451 1377 ntBASIC19.04■□□□□ 0.64
RB1P06400 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RB1P06400 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.04■□□□□ 0.64
RB1P06400 AC093484.2-201ENST00000580996 2166 ntBASIC19.03■□□□□ 0.64
RB1P06400 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.03■□□□□ 0.64
RB1P06400 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
RB1P06400 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.03■□□□□ 0.64
RB1P06400 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.03■□□□□ 0.64
RB1P06400 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 AC254562.1-201ENST00000417586 456 ntBASIC19.03■□□□□ 0.64
RB1P06400 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.03■□□□□ 0.64
RB1P06400 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 SNHG9-202ENST00000564014 471 ntBASIC19.03■□□□□ 0.64
RB1P06400 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RB1P06400 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.03■□□□□ 0.64
RB1P06400 AL589182.2-201ENST00000619332 1049 ntBASIC19.03■□□□□ 0.64
RB1P06400 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.03■□□□□ 0.64
RB1P06400 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.03■□□□□ 0.64
RB1P06400 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
RB1P06400 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RB1P06400 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RB1P06400 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RB1P06400 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RB1P06400 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.02■□□□□ 0.64
RB1P06400 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
RB1P06400 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.02■□□□□ 0.64
RB1P06400 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RB1P06400 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RB1P06400 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
RB1P06400 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
RB1P06400 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RB1P06400 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
RB1P06400 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RB1P06400 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RB1P06400 AC103564.2-201ENST00000432853 1299 ntBASIC19.02■□□□□ 0.64
RB1P06400 KRT18P2-201ENST00000447938 1258 ntBASIC19.02■□□□□ 0.64
RB1P06400 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
RB1P06400 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.02■□□□□ 0.64
RB1P06400 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.02■□□□□ 0.64
RB1P06400 AL596442.2-201ENST00000610240 980 ntBASIC19.02■□□□□ 0.64
RB1P06400 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
RB1P06400 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.02■□□□□ 0.64
RB1P06400 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.63
RB1P06400 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.02■□□□□ 0.63
RB1P06400 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.02■□□□□ 0.63
RB1P06400 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.02■□□□□ 0.63
RB1P06400 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
RB1P06400 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.01■□□□□ 0.63
RB1P06400 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 METTL21AP1-201ENST00000438852 635 ntBASIC19.01■□□□□ 0.63
RB1P06400 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RB1P06400 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.01■□□□□ 0.63
RB1P06400 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.01■□□□□ 0.63
RB1P06400 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 304.1 ms