Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.33■□□□□ 0.69
SNX9Q9Y5X1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 AL845331.1-201ENST00000424978 1190 ntBASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 AC011840.4-201ENST00000578471 627 ntBASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 MIR3652-201ENST00000579335 131 ntBASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 CLEC4GP1-201ENST00000596555 870 ntBASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX9Q9Y5X1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX9Q9Y5X1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 MTCL1P1-201ENST00000446207 792 ntBASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 AC091607.1-201ENST00000490318 1060 ntBASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 Z69720.1-201ENST00000601483 472 ntBASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 AC012313.10-201ENST00000623509 926 ntBASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 BCL2-203ENST00000589955 5011 ntBASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.31■□□□□ 0.68
SNX9Q9Y5X1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 REXO1L9P-201ENST00000604264 2108 ntBASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX9Q9Y5X1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms