Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 PNMT-202ENST00000394246 821 ntTSL 2 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 FAM8A3P-201ENST00000427218 844 ntBASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
SHROOM4Q9ULL8 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 AC009947.1-201ENST00000444350 727 ntBASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 CYGB-205ENST00000590175 830 ntTSL 3 BASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC34.2■■■■□ 3.06
SHROOM4Q9ULL8 AC126763.1-201ENST00000552015 2118 ntBASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 LAGE3P1-201ENST00000425356 484 ntBASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 PON3-203ENST00000427422 894 ntTSL 3 BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC34.19■■■■□ 3.06
SHROOM4Q9ULL8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 ALG1L5P-201ENST00000482043 771 ntBASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 COX5A-204ENST00000567270 579 ntTSL 3 BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC34.18■■■■□ 3.06
SHROOM4Q9ULL8 AL356309.3-201ENST00000624132 1934 ntBASIC34.17■■■■□ 3.06
SHROOM4Q9ULL8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC34.17■■■■□ 3.06
SHROOM4Q9ULL8 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC34.17■■■■□ 3.06
SHROOM4Q9ULL8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC34.17■■■■□ 3.06
SHROOM4Q9ULL8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
SHROOM4Q9ULL8 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 AC007967.2-201ENST00000432613 625 ntBASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 AC068472.1-201ENST00000474589 881 ntBASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC34.16■■■■□ 3.06
SHROOM4Q9ULL8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 ETFA-208ENST00000559602 792 ntTSL 3 BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 AC105339.3-201ENST00000560043 636 ntBASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 SPCS2P1-201ENST00000561636 679 ntBASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 AC239800.4-201ENST00000603712 296 ntBASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms