Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 AC008735.5-201ENST00000623544 497 ntBASIC20.17■□□□□ 0.82
VTA1Q9NP79 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VTA1Q9NP79 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VTA1Q9NP79 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VTA1Q9NP79 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.17■□□□□ 0.82
VTA1Q9NP79 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VTA1Q9NP79 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VTA1Q9NP79 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 MTDHP4-201ENST00000600287 670 ntBASIC20.16■□□□□ 0.82
VTA1Q9NP79 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 AC093010.1-201ENST00000473625 1624 ntBASIC20.16■□□□□ 0.82
VTA1Q9NP79 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
VTA1Q9NP79 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VTA1Q9NP79 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC098831.1-202ENST00000438821 336 ntBASIC20.15■□□□□ 0.82
VTA1Q9NP79 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC122714.2-201ENST00000502787 707 ntBASIC20.15■□□□□ 0.82
VTA1Q9NP79 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC012640.2-201ENST00000561606 901 ntBASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC107918.4-202ENST00000641623 219 ntBASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC104109.2-201ENST00000602919 1418 ntBASIC20.15■□□□□ 0.82
VTA1Q9NP79 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 AC126763.1-201ENST00000552015 2118 ntBASIC20.15■□□□□ 0.82
VTA1Q9NP79 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VTA1Q9NP79 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VTA1Q9NP79 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VTA1Q9NP79 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VTA1Q9NP79 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 MIR940-201ENST00000401276 94 ntBASIC20.14■□□□□ 0.81
VTA1Q9NP79 AC092910.1-201ENST00000482027 1129 ntBASIC20.14■□□□□ 0.81
VTA1Q9NP79 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 AC092865.5-201ENST00000545435 363 ntBASIC20.14■□□□□ 0.81
VTA1Q9NP79 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VTA1Q9NP79 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VTA1Q9NP79 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms