Protein–RNA interactions for Protein: Q9HD90

NEUROD4, Neurogenic differentiation factor 4, humanhuman

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEUROD4Q9HD90 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 AC024243.1-201ENST00000609234 778 ntBASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NEUROD4Q9HD90 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 ECEL1P2-202ENST00000465689 757 ntBASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 MIR3917-201ENST00000580971 93 ntBASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 PKD1P1-201ENST00000458669 6805 ntBASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.1■□□□□ 0.33
NEUROD4Q9HD90 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 AC005521.1-201ENST00000393351 872 ntBASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 KRT18P22-201ENST00000402024 1347 ntBASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 KRT18P55-202ENST00000578578 1546 ntBASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEUROD4Q9HD90 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms