Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 KRT8P47-201ENST00000604727 1398 ntBASIC19.55■□□□□ 0.72
CDT1Q9H211 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CDT1Q9H211 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CDT1Q9H211 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.55■□□□□ 0.72
CDT1Q9H211 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CDT1Q9H211 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDT1Q9H211 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 AL020996.1-203ENST00000536896 2307 ntBASIC19.54■□□□□ 0.72
CDT1Q9H211 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CDT1Q9H211 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 AC125634.1-201ENST00000438758 1403 ntBASIC19.54■□□□□ 0.72
CDT1Q9H211 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CDT1Q9H211 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.54■□□□□ 0.72
CDT1Q9H211 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.54■□□□□ 0.72
CDT1Q9H211 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.54■□□□□ 0.72
CDT1Q9H211 AC096582.2-201ENST00000510860 516 ntBASIC19.54■□□□□ 0.72
CDT1Q9H211 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.54■□□□□ 0.72
CDT1Q9H211 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 AC091304.2-201ENST00000564639 760 ntBASIC19.54■□□□□ 0.72
CDT1Q9H211 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.54■□□□□ 0.72
CDT1Q9H211 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.54■□□□□ 0.72
CDT1Q9H211 IFNL4P1-201ENST00000607083 540 ntBASIC19.54■□□□□ 0.72
CDT1Q9H211 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CDT1Q9H211 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
CDT1Q9H211 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.54■□□□□ 0.72
CDT1Q9H211 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CDT1Q9H211 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CDT1Q9H211 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDT1Q9H211 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CDT1Q9H211 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.53■□□□□ 0.72
CDT1Q9H211 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.53■□□□□ 0.72
CDT1Q9H211 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.53■□□□□ 0.72
CDT1Q9H211 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.53■□□□□ 0.72
CDT1Q9H211 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.53■□□□□ 0.72
CDT1Q9H211 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.53■□□□□ 0.72
CDT1Q9H211 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 AC111152.3-201ENST00000569699 673 ntBASIC19.53■□□□□ 0.72
CDT1Q9H211 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.53■□□□□ 0.72
CDT1Q9H211 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.53■□□□□ 0.72
CDT1Q9H211 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.53■□□□□ 0.72
CDT1Q9H211 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CDT1Q9H211 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDT1Q9H211 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
CDT1Q9H211 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.52■□□□□ 0.72
CDT1Q9H211 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.52■□□□□ 0.72
CDT1Q9H211 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.52■□□□□ 0.72
CDT1Q9H211 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.52■□□□□ 0.72
CDT1Q9H211 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDT1Q9H211 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CDT1Q9H211 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.52■□□□□ 0.72
CDT1Q9H211 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.52■□□□□ 0.72
CDT1Q9H211 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
CDT1Q9H211 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CDT1Q9H211 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
CDT1Q9H211 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.52■□□□□ 0.72
CDT1Q9H211 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms