Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CPNE1Q99829 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.1■□□□□ 0.49
CPNE1Q99829 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE1Q99829 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE1Q99829 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CPNE1Q99829 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CPNE1Q99829 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 KRT17P2-201ENST00000300992 1314 ntBASIC18.09■□□□□ 0.49
CPNE1Q99829 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.09■□□□□ 0.49
CPNE1Q99829 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 SEC1P-202ENST00000473944 940 ntBASIC18.09■□□□□ 0.49
CPNE1Q99829 AC128688.1-201ENST00000487626 519 ntBASIC18.09■□□□□ 0.49
CPNE1Q99829 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 AC008687.5-201ENST00000593746 558 ntBASIC18.09■□□□□ 0.49
CPNE1Q99829 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.09■□□□□ 0.49
CPNE1Q99829 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.09■□□□□ 0.49
CPNE1Q99829 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CPNE1Q99829 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CPNE1Q99829 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CPNE1Q99829 AC132938.6-201ENST00000623828 1655 ntBASIC18.09■□□□□ 0.49
CPNE1Q99829 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.09■□□□□ 0.49
CPNE1Q99829 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE1Q99829 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CPNE1Q99829 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CPNE1Q99829 AL645608.8-201ENST00000606034 2086 ntBASIC18.08■□□□□ 0.49
CPNE1Q99829 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.08■□□□□ 0.49
CPNE1Q99829 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CPNE1Q99829 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CPNE1Q99829 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CPNE1Q99829 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.48
CPNE1Q99829 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.48
CPNE1Q99829 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.08■□□□□ 0.48
CPNE1Q99829 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 AL355075.4-201ENST00000554988 638 ntBASIC18.08■□□□□ 0.48
CPNE1Q99829 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.08■□□□□ 0.48
CPNE1Q99829 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CPNE1Q99829 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
CPNE1Q99829 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CPNE1Q99829 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPNE1Q99829 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
CPNE1Q99829 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CPNE1Q99829 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
CPNE1Q99829 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.07■□□□□ 0.48
CPNE1Q99829 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.07■□□□□ 0.48
CPNE1Q99829 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.07■□□□□ 0.48
CPNE1Q99829 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.07■□□□□ 0.48
CPNE1Q99829 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.07■□□□□ 0.48
CPNE1Q99829 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.07■□□□□ 0.48
CPNE1Q99829 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CPNE1Q99829 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPNE1Q99829 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.07■□□□□ 0.48
CPNE1Q99829 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms