Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
NEK1Q96PY6 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK1Q96PY6 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 AC092647.4-201ENST00000457211 535 ntBASIC21.42■■□□□ 1.02
NEK1Q96PY6 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 KRT18P55-202ENST00000578578 1546 ntBASIC21.42■■□□□ 1.02
NEK1Q96PY6 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK1Q96PY6 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
NEK1Q96PY6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 AC134043.2-201ENST00000624206 2238 ntBASIC21.41■■□□□ 1.02
NEK1Q96PY6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 KRT18P48-201ENST00000434763 852 ntBASIC21.41■■□□□ 1.02
NEK1Q96PY6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 DUX4L26-201ENST00000489078 1255 ntBASIC21.41■■□□□ 1.02
NEK1Q96PY6 KRT18P35-201ENST00000510488 1269 ntBASIC21.41■■□□□ 1.02
NEK1Q96PY6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NEK1Q96PY6 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK1Q96PY6 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 ARMC10P1-201ENST00000313754 855 ntBASIC21.4■■□□□ 1.02
NEK1Q96PY6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK1Q96PY6 MIR662-201ENST00000384847 95 ntBASIC21.4■■□□□ 1.02
NEK1Q96PY6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.4■■□□□ 1.02
NEK1Q96PY6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms