Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KRT18P29-201ENST00000397031 1267 ntBASIC19.53■□□□□ 0.72
CCDC42Q96M95 RPS2P55-201ENST00000397318 883 ntBASIC19.53■□□□□ 0.72
CCDC42Q96M95 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.53■□□□□ 0.72
CCDC42Q96M95 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 AC107956.1-201ENST00000494359 873 ntBASIC19.53■□□□□ 0.72
CCDC42Q96M95 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ITM2C-210ENST00000620962 501 ntBASIC19.52■□□□□ 0.72
CCDC42Q96M95 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC42Q96M95 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC42Q96M95 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC42Q96M95 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.71
CCDC42Q96M95 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CCDC42Q96M95 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC42Q96M95 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.52■□□□□ 0.71
CCDC42Q96M95 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC42Q96M95 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.52■□□□□ 0.71
CCDC42Q96M95 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC106820.2-201ENST00000563775 3264 ntBASIC19.51■□□□□ 0.71
CCDC42Q96M95 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AL355355.2-201ENST00000442321 338 ntBASIC19.51■□□□□ 0.71
CCDC42Q96M95 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AP003041.3-201ENST00000527151 707 ntBASIC19.51■□□□□ 0.71
CCDC42Q96M95 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AP005242.2-201ENST00000580065 1175 ntBASIC19.51■□□□□ 0.71
CCDC42Q96M95 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 CR769767.2-201ENST00000622735 460 ntBASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC113410.3-201ENST00000623366 203 ntBASIC19.51■□□□□ 0.71
CCDC42Q96M95 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC42Q96M95 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC42Q96M95 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms