Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 AC135050.7-201ENST00000624508 2218 ntBASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 ABALON-201ENST00000629058 1903 ntBASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ECHDC3Q96DC8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 AC022898.2-201ENST00000616822 1312 ntBASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 AC104819.1-201ENST00000504587 486 ntBASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 AC074051.2-201ENST00000565115 352 ntBASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 AL354751.1-201ENST00000412768 1863 ntBASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.05■□□□□ 0.48
ECHDC3Q96DC8 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 NSUN5P1-202ENST00000421140 1535 ntBASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 NSUN5P2-203ENST00000457352 1529 ntBASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 DUSP5P1-201ENST00000441325 1139 ntBASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 AL138831.2-201ENST00000606564 490 ntBASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ECHDC3Q96DC8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 FLJ13224-201ENST00000313737 1514 ntBASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.03■□□□□ 0.48
ECHDC3Q96DC8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms