Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GPR182-203ENST00000622922 591 ntBASIC18.22■□□□□ 0.51
TTC28Q96AY4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 AC009118.2-201ENST00000613275 655 ntBASIC18.22■□□□□ 0.51
TTC28Q96AY4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
TTC28Q96AY4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.21■□□□□ 0.51
TTC28Q96AY4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 AL592309.1-201ENST00000443127 649 ntBASIC18.21■□□□□ 0.51
TTC28Q96AY4 AC004890.2-204ENST00000481968 304 ntBASIC18.21■□□□□ 0.51
TTC28Q96AY4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TTC28Q96AY4 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.21■□□□□ 0.51
TTC28Q96AY4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.21■□□□□ 0.51
TTC28Q96AY4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
TTC28Q96AY4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TTC28Q96AY4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TTC28Q96AY4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
TTC28Q96AY4 GPS2P2-201ENST00000430745 888 ntBASIC18.21■□□□□ 0.5
TTC28Q96AY4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
TTC28Q96AY4 AC092552.1-201ENST00000547243 906 ntBASIC18.21■□□□□ 0.5
TTC28Q96AY4 AC008687.5-201ENST00000593746 558 ntBASIC18.21■□□□□ 0.5
TTC28Q96AY4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.5
TTC28Q96AY4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
TTC28Q96AY4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.21■□□□□ 0.5
TTC28Q96AY4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.5
TTC28Q96AY4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TTC28Q96AY4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 AC005237.2-201ENST00000434368 219 ntBASIC18.2■□□□□ 0.5
TTC28Q96AY4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TTC28Q96AY4 TP53TG3HP-202ENST00000569755 579 ntBASIC18.2■□□□□ 0.5
TTC28Q96AY4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TTC28Q96AY4 AC006116.8-202ENST00000587620 1550 ntBASIC18.19■□□□□ 0.5
TTC28Q96AY4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 Z82202.1-201ENST00000623446 1880 ntBASIC18.19■□□□□ 0.5
TTC28Q96AY4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 BCYRN1-201ENST00000418539 200 ntBASIC18.19■□□□□ 0.5
TTC28Q96AY4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TTC28Q96AY4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.19■□□□□ 0.5
TTC28Q96AY4 MIR658-201ENST00000385210 100 ntBASIC18.18■□□□□ 0.5
TTC28Q96AY4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 AC097493.3-201ENST00000509725 367 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms