Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 C2orf69P3-201ENST00000565542 1120 ntBASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 CYP2D8P-201ENST00000433633 1490 ntBASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 TSPY14P-201ENST00000303979 915 ntBASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 SEC1P-202ENST00000473944 940 ntBASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 AC009065.1-201ENST00000564055 1225 ntBASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 AC024243.1-201ENST00000609234 778 ntBASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
ATG4AQ8WYN0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 MIR3180-4-201ENST00000582223 153 ntBASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 AL355312.1-201ENST00000407115 2176 ntBASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4AQ8WYN0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms