Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 AL591684.3-201ENST00000605187 298 ntBASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC60Q8IWA6 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC60Q8IWA6 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 FDX1P1-201ENST00000449115 551 ntBASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 SAPCD2P3-201ENST00000455031 850 ntBASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 AC009078.2-202ENST00000463353 338 ntBASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 AF238378.1-201ENST00000526806 358 ntBASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 AC009533.2-201ENST00000543664 586 ntBASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 KRT8P47-201ENST00000604727 1398 ntBASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC60Q8IWA6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 KRT8P10-201ENST00000450021 1447 ntBASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 AC009113.1-201ENST00000570267 2443 ntBASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC60Q8IWA6 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms