Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 CYP2D8P-201ENST00000433633 1490 ntBASIC20.65■□□□□ 0.9
ATL3Q6DD88 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 AP000523.1-201ENST00000398242 1049 ntBASIC20.65■□□□□ 0.9
ATL3Q6DD88 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 SNORA78-201ENST00000459373 127 ntBASIC20.65■□□□□ 0.9
ATL3Q6DD88 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 NAPSB-206ENST00000562112 1266 ntBASIC20.65■□□□□ 0.9
ATL3Q6DD88 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 AL355312.1-201ENST00000407115 2176 ntBASIC20.65■□□□□ 0.9
ATL3Q6DD88 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATL3Q6DD88 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
ATL3Q6DD88 HCG11-201ENST00000411553 5696 ntBASIC20.64■□□□□ 0.9
ATL3Q6DD88 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATL3Q6DD88 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATL3Q6DD88 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
ATL3Q6DD88 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.64■□□□□ 0.9
ATL3Q6DD88 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATL3Q6DD88 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ATL3Q6DD88 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
ATL3Q6DD88 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.64■□□□□ 0.9
ATL3Q6DD88 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATL3Q6DD88 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
ATL3Q6DD88 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 FAM87A-204ENST00000613235 858 ntBASIC20.64■□□□□ 0.89
ATL3Q6DD88 AC116407.2-201ENST00000613639 860 ntBASIC20.64■□□□□ 0.89
ATL3Q6DD88 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 AC100803.2-201ENST00000562459 1963 ntBASIC20.64■□□□□ 0.89
ATL3Q6DD88 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
ATL3Q6DD88 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 AL023806.1-201ENST00000603994 1649 ntBASIC20.64■□□□□ 0.89
ATL3Q6DD88 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATL3Q6DD88 AC108860.2-201ENST00000562760 2183 ntBASIC20.63■□□□□ 0.89
ATL3Q6DD88 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 PP12613-201ENST00000424958 2230 ntBASIC20.63■□□□□ 0.89
ATL3Q6DD88 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATL3Q6DD88 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.63■□□□□ 0.89
ATL3Q6DD88 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms