Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 AL138688.1-201ENST00000624851 1594 ntBASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 FITM1-202ENST00000559294 800 ntBASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 AC080080.1-201ENST00000625121 2420 ntBASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 AC100803.2-201ENST00000562459 1963 ntBASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRIF1Q5T3J3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 AL158047.1-201ENST00000445918 881 ntBASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 AC116562.4-202ENST00000641738 218 ntBASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LRIF1Q5T3J3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 Z99916.2-201ENST00000604037 246 ntBASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 AC010653.2-201ENST00000623505 997 ntBASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms