Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 MIR4745-201ENST00000577608 62 ntBASIC19.06■□□□□ 0.64
CHD9Q3L8U1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHD9Q3L8U1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.05■□□□□ 0.64
CHD9Q3L8U1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHD9Q3L8U1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 LINC01126-201ENST00000623515 1646 ntBASIC19.04■□□□□ 0.64
CHD9Q3L8U1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHD9Q3L8U1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 MIR661-201ENST00000384842 89 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC005225.4-201ENST00000557330 545 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC091812.2-201ENST00000619081 385 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AD001527.2-201ENST00000622994 785 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AF228730.6-201ENST00000641497 218 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC084121.3-201ENST00000641716 218 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC105233.6-201ENST00000642093 218 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms