Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX4Q33E94 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX4Q33E94 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.86■□□□□ 0.29
RFX4Q33E94 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.86■□□□□ 0.29
RFX4Q33E94 KRT16P1-201ENST00000399124 1418 ntBASIC16.86■□□□□ 0.29
RFX4Q33E94 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX4Q33E94 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
RFX4Q33E94 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
RFX4Q33E94 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX4Q33E94 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
RFX4Q33E94 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
RFX4Q33E94 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.85■□□□□ 0.29
RFX4Q33E94 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 CKBP1-201ENST00000565489 1086 ntBASIC16.85■□□□□ 0.29
RFX4Q33E94 AC006058.3-201ENST00000606217 1069 ntBASIC16.85■□□□□ 0.29
RFX4Q33E94 AC011298.2-201ENST00000617989 482 ntBASIC16.85■□□□□ 0.29
RFX4Q33E94 AC130371.2-201ENST00000619443 611 ntBASIC16.85■□□□□ 0.29
RFX4Q33E94 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 AL031985.4-201ENST00000642138 673 ntBASIC16.85■□□□□ 0.29
RFX4Q33E94 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX4Q33E94 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
RFX4Q33E94 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX4Q33E94 AL109659.2-201ENST00000606809 1674 ntBASIC16.85■□□□□ 0.29
RFX4Q33E94 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
RFX4Q33E94 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX4Q33E94 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 AC026271.3-201ENST00000571884 352 ntBASIC16.84■□□□□ 0.29
RFX4Q33E94 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.84■□□□□ 0.29
RFX4Q33E94 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
RFX4Q33E94 CR392000.1-201ENST00000624770 1228 ntBASIC16.84■□□□□ 0.29
RFX4Q33E94 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX4Q33E94 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 AL138688.1-201ENST00000624851 1594 ntBASIC16.84■□□□□ 0.29
RFX4Q33E94 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RFX4Q33E94 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 AC022211.2-201ENST00000585075 2527 ntBASIC16.84■□□□□ 0.29
RFX4Q33E94 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX4Q33E94 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
RFX4Q33E94 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RFX4Q33E94 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RFX4Q33E94 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RFX4Q33E94 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
RFX4Q33E94 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
RFX4Q33E94 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms