Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC073648.2-201ENST00000510116 352 ntBASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC139887.3-201ENST00000568585 713 ntBASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC025062.2-201ENST00000605477 670 ntBASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.04■□□□□ 0.96
SHROOM1Q2M3G4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.03■□□□□ 0.96
SHROOM1Q2M3G4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 SCARNA2-201ENST00000458748 420 ntBASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 RPL13AP23-201ENST00000480739 586 ntBASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM1Q2M3G4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHROOM1Q2M3G4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
SHROOM1Q2M3G4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHROOM1Q2M3G4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHROOM1Q2M3G4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 MIR940-201ENST00000401276 94 ntBASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 AC106730.1-201ENST00000566722 1090 ntBASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM1Q2M3G4 AC093010.1-201ENST00000473625 1624 ntBASIC21■□□□□ 0.95
SHROOM1Q2M3G4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms