Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SF3A1Q15459 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.92■□□□□ 0.94
SF3A1Q15459 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 LTB4R2-202ENST00000528054 3092 ntBASIC20.91■□□□□ 0.94
SF3A1Q15459 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
SF3A1Q15459 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SF3A1Q15459 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SF3A1Q15459 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SF3A1Q15459 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SF3A1Q15459 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.91■□□□□ 0.94
SF3A1Q15459 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SF3A1Q15459 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.91■□□□□ 0.94
SF3A1Q15459 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.91■□□□□ 0.94
SF3A1Q15459 AC093827.2-201ENST00000512654 315 ntBASIC20.91■□□□□ 0.94
SF3A1Q15459 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.91■□□□□ 0.94
SF3A1Q15459 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.91■□□□□ 0.94
SF3A1Q15459 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 FAM87A-204ENST00000613235 858 ntBASIC20.91■□□□□ 0.94
SF3A1Q15459 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
SF3A1Q15459 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.91■□□□□ 0.94
SF3A1Q15459 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SF3A1Q15459 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SF3A1Q15459 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SF3A1Q15459 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.9■□□□□ 0.94
SF3A1Q15459 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.9■□□□□ 0.94
SF3A1Q15459 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.9■□□□□ 0.94
SF3A1Q15459 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.9■□□□□ 0.94
SF3A1Q15459 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.9■□□□□ 0.94
SF3A1Q15459 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
SF3A1Q15459 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.9■□□□□ 0.94
SF3A1Q15459 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SF3A1Q15459 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SF3A1Q15459 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SF3A1Q15459 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SF3A1Q15459 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
SF3A1Q15459 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SF3A1Q15459 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SF3A1Q15459 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SF3A1Q15459 AP000997.3-201ENST00000623333 2250 ntBASIC20.89■□□□□ 0.94
SF3A1Q15459 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 AC009947.2-201ENST00000444014 672 ntBASIC20.89■□□□□ 0.93
SF3A1Q15459 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.89■□□□□ 0.93
SF3A1Q15459 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.89■□□□□ 0.93
SF3A1Q15459 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.89■□□□□ 0.93
SF3A1Q15459 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SF3A1Q15459 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.89■□□□□ 0.93
SF3A1Q15459 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.89■□□□□ 0.93
SF3A1Q15459 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SF3A1Q15459 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.88■□□□□ 0.93
SF3A1Q15459 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms