Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.86■□□□□ 0.45
LIMK1P53667 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
LIMK1P53667 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMK1P53667 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
LIMK1P53667 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LIMK1P53667 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.85■□□□□ 0.45
LIMK1P53667 CROCCP3-202ENST00000420820 1947 ntBASIC17.85■□□□□ 0.45
LIMK1P53667 METTL21AP1-201ENST00000438852 635 ntBASIC17.85■□□□□ 0.45
LIMK1P53667 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.85■□□□□ 0.45
LIMK1P53667 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
LIMK1P53667 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 AP005117.1-201ENST00000584346 1413 ntBASIC17.85■□□□□ 0.45
LIMK1P53667 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 AC092364.2-202ENST00000597012 1073 ntBASIC17.85■□□□□ 0.45
LIMK1P53667 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMK1P53667 AC008735.5-201ENST00000623544 497 ntBASIC17.85■□□□□ 0.45
LIMK1P53667 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
LIMK1P53667 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIMK1P53667 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.84■□□□□ 0.45
LIMK1P53667 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
LIMK1P53667 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LIMK1P53667 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMK1P53667 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMK1P53667 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMK1P53667 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.84■□□□□ 0.45
LIMK1P53667 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMK1P53667 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.84■□□□□ 0.45
LIMK1P53667 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
LIMK1P53667 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMK1P53667 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.84■□□□□ 0.45
LIMK1P53667 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMK1P53667 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMK1P53667 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMK1P53667 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMK1P53667 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMK1P53667 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMK1P53667 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMK1P53667 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMK1P53667 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 INTS4P1-201ENST00000438455 1935 ntBASIC17.83■□□□□ 0.44
LIMK1P53667 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMK1P53667 FAM8A3P-201ENST00000427218 844 ntBASIC17.83■□□□□ 0.44
LIMK1P53667 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMK1P53667 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.83■□□□□ 0.44
LIMK1P53667 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 AC012640.2-201ENST00000561606 901 ntBASIC17.83■□□□□ 0.44
LIMK1P53667 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 AC005336.2-201ENST00000593183 939 ntBASIC17.83■□□□□ 0.44
LIMK1P53667 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LIMK1P53667 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
LIMK1P53667 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMK1P53667 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMK1P53667 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.82■□□□□ 0.44
LIMK1P53667 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.82■□□□□ 0.44
LIMK1P53667 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LIMK1P53667 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms