Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
CUX1P39880 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC30.12■■■□□ 2.41
CUX1P39880 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC30.12■■■□□ 2.41
CUX1P39880 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC30.12■■■□□ 2.41
CUX1P39880 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
CUX1P39880 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC30.12■■■□□ 2.41
CUX1P39880 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC30.12■■■□□ 2.41
CUX1P39880 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CUX1P39880 ESPNP-201ENST00000270691 2015 ntBASIC30.12■■■□□ 2.41
CUX1P39880 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC30.12■■■□□ 2.41
CUX1P39880 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC30.12■■■□□ 2.41
CUX1P39880 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC30.12■■■□□ 2.41
CUX1P39880 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC30.12■■■□□ 2.41
CUX1P39880 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC30.12■■■□□ 2.41
CUX1P39880 MED29-202ENST00000594368 1471 ntTSL 2 BASIC30.11■■■□□ 2.41
CUX1P39880 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC30.11■■■□□ 2.41
CUX1P39880 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC30.11■■■□□ 2.41
CUX1P39880 AC132938.5-201ENST00000624980 1813 ntBASIC30.11■■■□□ 2.41
CUX1P39880 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CUX1P39880 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CUX1P39880 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
CUX1P39880 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC30.11■■■□□ 2.41
CUX1P39880 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
CUX1P39880 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
CUX1P39880 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC30.1■■■□□ 2.41
CUX1P39880 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 ATP6V0CP3-201ENST00000417255 467 ntBASIC30.1■■■□□ 2.41
CUX1P39880 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC30.1■■■□□ 2.41
CUX1P39880 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC30.1■■■□□ 2.41
CUX1P39880 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC30.1■■■□□ 2.41
CUX1P39880 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC30.1■■■□□ 2.41
CUX1P39880 CYB561-217ENST00000582997 877 ntTSL 5 BASIC30.1■■■□□ 2.41
CUX1P39880 AC008667.4-201ENST00000607370 168 ntBASIC30.1■■■□□ 2.41
CUX1P39880 C20orf181-201ENST00000623918 480 ntBASIC30.1■■■□□ 2.41
CUX1P39880 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
CUX1P39880 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC30.1■■■□□ 2.41
CUX1P39880 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC30.09■■■□□ 2.41
CUX1P39880 TBC1D3P5-201ENST00000579401 1545 ntBASIC30.09■■■□□ 2.41
CUX1P39880 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC30.09■■■□□ 2.41
CUX1P39880 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC30.09■■■□□ 2.41
CUX1P39880 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
CUX1P39880 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC30.09■■■□□ 2.41
CUX1P39880 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CUX1P39880 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC30.09■■■□□ 2.41
CUX1P39880 AC010507.1-201ENST00000633895 436 ntBASIC30.09■■■□□ 2.41
CUX1P39880 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CUX1P39880 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CUX1P39880 GPR89P-201ENST00000407924 1495 ntBASIC30.09■■■□□ 2.41
CUX1P39880 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC30.08■■■□□ 2.41
CUX1P39880 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC30.08■■■□□ 2.41
CUX1P39880 IGHV3-65-201ENST00000523210 341 ntBASIC30.08■■■□□ 2.41
CUX1P39880 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC30.08■■■□□ 2.41
CUX1P39880 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC30.08■■■□□ 2.41
CUX1P39880 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC30.08■■■□□ 2.41
CUX1P39880 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC30.08■■■□□ 2.41
CUX1P39880 MIR4751-201ENST00000578027 74 ntBASIC30.08■■■□□ 2.41
CUX1P39880 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC30.08■■■□□ 2.41
CUX1P39880 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC30.08■■■□□ 2.41
CUX1P39880 NCF1C-201ENST00000438382 1427 ntBASIC30.08■■■□□ 2.41
CUX1P39880 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
CUX1P39880 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
CUX1P39880 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CUX1P39880 PUS1-205ENST00000535067 838 ntTSL 3 BASIC30.07■■■□□ 2.4
CUX1P39880 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CUX1P39880 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CUX1P39880 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CUX1P39880 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC30.07■■■□□ 2.4
CUX1P39880 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC30.07■■■□□ 2.4
CUX1P39880 ELL2P1-201ENST00000413990 1906 ntBASIC30.07■■■□□ 2.4
CUX1P39880 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC30.07■■■□□ 2.4
CUX1P39880 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CUX1P39880 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC30.07■■■□□ 2.4
CUX1P39880 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 MKNK2P1-201ENST00000437526 628 ntBASIC30.06■■■□□ 2.4
CUX1P39880 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC30.06■■■□□ 2.4
CUX1P39880 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 GMCL1P1-201ENST00000463439 1581 ntBASIC30.06■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms