Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TBC1D3P5-201ENST00000579401 1545 ntBASIC23.74■■□□□ 1.39
COL18A1P39060 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
COL18A1P39060 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC23.74■■□□□ 1.39
COL18A1P39060 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC23.74■■□□□ 1.39
COL18A1P39060 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
COL18A1P39060 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL18A1P39060 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
COL18A1P39060 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
COL18A1P39060 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
COL18A1P39060 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL18A1P39060 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC23.73■■□□□ 1.39
COL18A1P39060 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC23.73■■□□□ 1.39
COL18A1P39060 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC23.73■■□□□ 1.39
COL18A1P39060 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC23.73■■□□□ 1.39
COL18A1P39060 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC23.73■■□□□ 1.39
COL18A1P39060 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.73■■□□□ 1.39
COL18A1P39060 MED29-202ENST00000594368 1471 ntTSL 2 BASIC23.73■■□□□ 1.39
COL18A1P39060 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC23.73■■□□□ 1.39
COL18A1P39060 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL18A1P39060 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL18A1P39060 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL18A1P39060 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL18A1P39060 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL18A1P39060 CRYGEP-201ENST00000412192 528 ntBASIC23.73■■□□□ 1.39
COL18A1P39060 ATP6V0CP3-201ENST00000417255 467 ntBASIC23.73■■□□□ 1.39
COL18A1P39060 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL18A1P39060 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC23.73■■□□□ 1.39
COL18A1P39060 AC005829.1-201ENST00000570002 483 ntBASIC23.73■■□□□ 1.39
COL18A1P39060 AC008667.4-201ENST00000607370 168 ntBASIC23.73■■□□□ 1.39
COL18A1P39060 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL18A1P39060 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC23.72■■□□□ 1.39
COL18A1P39060 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC23.72■■□□□ 1.39
COL18A1P39060 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC23.72■■□□□ 1.39
COL18A1P39060 AC132938.5-201ENST00000624980 1813 ntBASIC23.72■■□□□ 1.39
COL18A1P39060 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL18A1P39060 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC23.72■■□□□ 1.39
COL18A1P39060 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
COL18A1P39060 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL18A1P39060 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC23.72■■□□□ 1.39
COL18A1P39060 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC23.72■■□□□ 1.39
COL18A1P39060 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC23.72■■□□□ 1.39
COL18A1P39060 CYB561-217ENST00000582997 877 ntTSL 5 BASIC23.72■■□□□ 1.39
COL18A1P39060 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC23.72■■□□□ 1.39
COL18A1P39060 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC23.71■■□□□ 1.39
COL18A1P39060 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
COL18A1P39060 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC23.71■■□□□ 1.39
COL18A1P39060 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC23.71■■□□□ 1.39
COL18A1P39060 MKNK2P1-201ENST00000437526 628 ntBASIC23.71■■□□□ 1.39
COL18A1P39060 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC23.71■■□□□ 1.39
COL18A1P39060 AL078644.1-201ENST00000609881 752 ntBASIC23.71■■□□□ 1.39
COL18A1P39060 AC079781.4-201ENST00000641908 219 ntBASIC23.71■■□□□ 1.39
COL18A1P39060 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
COL18A1P39060 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC23.71■■□□□ 1.39
COL18A1P39060 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL18A1P39060 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC23.71■■□□□ 1.39
COL18A1P39060 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
COL18A1P39060 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC23.7■■□□□ 1.39
COL18A1P39060 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC23.7■■□□□ 1.39
COL18A1P39060 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC23.7■■□□□ 1.39
COL18A1P39060 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC23.7■■□□□ 1.39
COL18A1P39060 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.7■■□□□ 1.39
COL18A1P39060 AC019129.2-201ENST00000609837 1235 ntBASIC23.7■■□□□ 1.39
COL18A1P39060 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
COL18A1P39060 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL18A1P39060 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC23.7■■□□□ 1.38
COL18A1P39060 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
COL18A1P39060 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL18A1P39060 PUS1-205ENST00000535067 838 ntTSL 3 BASIC23.7■■□□□ 1.38
COL18A1P39060 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC23.7■■□□□ 1.38
COL18A1P39060 MIR4469-201ENST00000583919 79 ntBASIC23.7■■□□□ 1.38
COL18A1P39060 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC23.7■■□□□ 1.38
COL18A1P39060 C20orf181-201ENST00000623918 480 ntBASIC23.7■■□□□ 1.38
COL18A1P39060 AC010507.1-201ENST00000633895 436 ntBASIC23.7■■□□□ 1.38
COL18A1P39060 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL18A1P39060 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL18A1P39060 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL18A1P39060 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC23.69■■□□□ 1.38
COL18A1P39060 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC23.69■■□□□ 1.38
COL18A1P39060 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL18A1P39060 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
COL18A1P39060 AC010654.1-201ENST00000615722 808 ntBASIC23.69■■□□□ 1.38
COL18A1P39060 AL805961.1-202ENST00000641562 540 ntBASIC23.69■■□□□ 1.38
COL18A1P39060 ELL2P1-201ENST00000413990 1906 ntBASIC23.69■■□□□ 1.38
COL18A1P39060 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL18A1P39060 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL18A1P39060 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms